beetroots package

Subpackages

• beetroots.approx_optim package
  • Subpackages
    • beetroots.approx_optim.approach_type package
      • Submodules
      • beetroots.approx_optim.approach_type.abstract_approach_type module
      • beetroots.approx_optim.approach_type.bo module
      • beetroots.approx_optim.approach_type.utils module
      • Module contents
    • beetroots.approx_optim.forward_map package
      • Submodules
      • beetroots.approx_optim.forward_map.abstract_forward_map module
      • beetroots.approx_optim.forward_map.nn module
      • beetroots.approx_optim.forward_map.poly_reg module
      • Module contents
  • Submodules
  • beetroots.approx_optim.abstract_approx_optim module
    • ApproxParamsOptim
      • ApproxParamsOptim.D
      • ApproxParamsOptim.D_no_kappa
      • ApproxParamsOptim.K
      • ApproxParamsOptim.L
      • ApproxParamsOptim.MODELS_PATH
      • ApproxParamsOptim.N
      • ApproxParamsOptim.N_clusters
      • ApproxParamsOptim.N_optim_per_line
      • ApproxParamsOptim.N_samples_theta
      • ApproxParamsOptim.N_samples_y
      • ApproxParamsOptim.check_num_uniques()
      • ApproxParamsOptim.cluster_sigma_a_raw()
      • ApproxParamsOptim.create_empty_output_folders()
      • ApproxParamsOptim.extract_optimal_params()
      • ApproxParamsOptim.list_lines
      • ApproxParamsOptim.log10_f_grid_size
      • ApproxParamsOptim.max_workers
      • ApproxParamsOptim.parse_args()
      • ApproxParamsOptim.path_centroids
      • ApproxParamsOptim.path_intermediate_result
      • ApproxParamsOptim.plot_clusters_sigma_a()
      • ApproxParamsOptim.plot_hist_log10_f_Theta()
      • ApproxParamsOptim.plot_hist_log10_f_Theta_with_optim_results()
      • ApproxParamsOptim.plot_params_with_sigma_a()
      • ApproxParamsOptim.rewrite_logs_correct_json_format()
      • ApproxParamsOptim.sample_theta()
      • ApproxParamsOptim.save_results_in_data_folder()
      • ApproxParamsOptim.save_setup_to_json()
      • ApproxParamsOptim.setup_params_bounds()
      • ApproxParamsOptim.setup_plot_text_sizes()
      • ApproxParamsOptim.sigma_a
      • ApproxParamsOptim.sigma_m
  • beetroots.approx_optim.nn_bo module
    • ApproxParamsOptimNNBO
      • ApproxParamsOptimNNBO.main()
  • beetroots.approx_optim.nn_bo_real_data module
    • ReadDataRealData
  • beetroots.approx_optim.nn_bo_toycase module
  • Module contents
• beetroots.inversion package
  • Subpackages
    • beetroots.inversion.plots package
      • Submodules
      • beetroots.inversion.plots.map_shaper module
      • beetroots.inversion.plots.plots_2d module
      • beetroots.inversion.plots.plots_2d_setup module
      • beetroots.inversion.plots.plots_estimator module
      • beetroots.inversion.plots.readable_line_names module
      • Module contents
    • beetroots.inversion.results package
      • Subpackages
      • Submodules
      • beetroots.inversion.results.abstract_results module
      • beetroots.inversion.results.results_mcmc module
      • beetroots.inversion.results.results_optim_map module
      • Module contents
    • beetroots.inversion.run package
      • Submodules
      • beetroots.inversion.run.abstract_run module
      • beetroots.inversion.run.run_mcmc module
      • beetroots.inversion.run.run_optim_map module
      • Module contents
  • Module contents
• beetroots.modelling package
  • Subpackages
    • beetroots.modelling.forward_maps package
      • Submodules
      • beetroots.modelling.forward_maps.abstract_base module
      • beetroots.modelling.forward_maps.abstract_exp module
      • beetroots.modelling.forward_maps.basic_exp module
      • beetroots.modelling.forward_maps.identity module
      • beetroots.modelling.forward_maps.neural_network_approx module
      • beetroots.modelling.forward_maps.regression_poly module
      • Module contents
    • beetroots.modelling.likelihoods package
      • Submodules
      • beetroots.modelling.likelihoods.abstract_likelihood module
      • beetroots.modelling.likelihoods.approx_censored_add_mult module
      • beetroots.modelling.likelihoods.gaussian module
      • beetroots.modelling.likelihoods.gaussian_censored module
      • beetroots.modelling.likelihoods.log_normal module
      • beetroots.modelling.likelihoods.log_normal_censored module
      • beetroots.modelling.likelihoods.utils module
      • Module contents
    • beetroots.modelling.priors package
      • Submodules
      • beetroots.modelling.priors.abstract_prior module
      • beetroots.modelling.priors.abstract_spatial_prior module
      • beetroots.modelling.priors.l22_laplacian_prior module
      • beetroots.modelling.priors.l22_prior module
      • beetroots.modelling.priors.smooth_indicator_prior module
      • beetroots.modelling.priors.spatial_prior_params module
      • beetroots.modelling.priors.tv_1D_prior module
      • beetroots.modelling.priors.tv_2D_prior module
      • Module contents
  • Submodules
  • beetroots.modelling.posterior module
    • Posterior
      • Posterior.D
      • Posterior.L
      • Posterior.N
      • Posterior.compute_all()
      • Posterior.compute_all_for_saver()
      • Posterior.dict_sites
      • Posterior.grad_neglog_pdf()
      • Posterior.hess_diag_neglog_pdf()
      • Posterior.likelihood
      • Posterior.mtm_neglog_pdf_priors()
      • Posterior.neglog_pdf()
      • Posterior.neglog_pdf_priors()
      • Posterior.prior_indicator
      • Posterior.prior_spatial
  • Module contents
• beetroots.sampler package
  • Subpackages
    • beetroots.sampler.saver package
      • Submodules
      • beetroots.sampler.saver.abstract_saver module
      • beetroots.sampler.saver.my_saver module
      • Module contents
    • beetroots.sampler.utils package
      • Submodules
      • beetroots.sampler.utils.mml module
      • beetroots.sampler.utils.my_sampler_params module
      • beetroots.sampler.utils.utils module
      • Module contents
  • Submodules
  • beetroots.sampler.abstract_sampler module
    • Sampler
      • Sampler.D
      • Sampler.ESS_OPTIM
      • Sampler.L
      • Sampler.N
      • Sampler.generate_random_start_Theta()
      • Sampler.generate_random_start_Theta_1pix()
      • Sampler.get_rng_state()
      • Sampler.rng
      • Sampler.sample()
      • Sampler.sample_regu_hyperparams()
      • Sampler.set_rng_state()
  • beetroots.sampler.my_sampler module
    • MySampler
      • MySampler.D
      • MySampler.L
      • MySampler.N
      • MySampler.alpha
      • MySampler.compute_correction_term
      • MySampler.compute_derivatives_2nd_order
      • MySampler.current
      • MySampler.eps0
      • MySampler.generate_new_sample_mtm()
      • MySampler.generate_new_sample_pmala_rmsprop()
      • MySampler.generate_random_start_Theta_1pix()
      • MySampler.k_mtm
      • MySampler.lambda_
      • MySampler.rng
      • MySampler.sample()
      • MySampler.selection_probas
      • MySampler.stochastic
      • MySampler.v
  • Module contents
• beetroots.simulations package
  • Subpackages
    • beetroots.simulations.astro package
      • Subpackages
      • Submodules
      • beetroots.simulations.astro.abstract_astro_simulation module
      • beetroots.simulations.astro.data_validation module
      • Module contents
  • Submodules
  • beetroots.simulations.abstract_simulation module
    • Simulation
      • Simulation.check_input_params_file()
      • Simulation.create_empty_output_folders()
      • Simulation.load_params()
      • Simulation.parse_args()
      • Simulation.setup_plot_text_sizes()
  • Module contents
• beetroots.space_transform package
  • Submodules
  • beetroots.space_transform.abstract_transform module
    • Scaler
      • Scaler.from_lin_to_scaled()
      • Scaler.from_scaled_to_lin()
  • beetroots.space_transform.id_transform module
    • IdScaler
      • IdScaler.from_lin_to_scaled()
      • IdScaler.from_scaled_to_lin()
  • beetroots.space_transform.transform module
    • MyScaler
      • MyScaler.D
      • MyScaler.LOG_10
      • MyScaler.from_lin_to_scaled()
      • MyScaler.from_scaled_to_lin()
      • MyScaler.list_is_log
      • MyScaler.mean_
      • MyScaler.std_
  • Module contents

Module contents