Index

A

AbstractPlots2D (class in beetroots.inversion.plots.plots_2d) alpha (beetroots.sampler.my_sampler.MySampler attribute) angle (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) ApproachType (class in beetroots.approx_optim.approach_type.abstract_approach_type) ApproxOptimForwardMap (class in beetroots.approx_optim.forward_map.abstract_forward_map) ApproxOptimNN (class in beetroots.approx_optim.forward_map.nn) ApproxOptimPolynomialReg (class in beetroots.approx_optim.forward_map.poly_reg) ApproxParamsOptim (class in beetroots.approx_optim.abstract_approx_optim)

ApproxParamsOptimNNBO (class in beetroots.approx_optim.nn_bo) arr_fixed_values (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) AstroSimulation (class in beetroots.simulations.astro.abstract_astro_simulation)

B

BasicExpForwardMap (class in beetroots.modelling.forward_maps.basic_exp) BasicForwardMap (class in beetroots.modelling.forward_maps.identity) batch_size (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) BayesianOptimizationApproach (class in beetroots.approx_optim.approach_type.bo) beetroots module beetroots.approx_optim module beetroots.approx_optim.abstract_approx_optim module beetroots.approx_optim.approach_type module beetroots.approx_optim.approach_type.abstract_approach_type module beetroots.approx_optim.approach_type.bo module beetroots.approx_optim.approach_type.utils module beetroots.approx_optim.forward_map module beetroots.approx_optim.forward_map.abstract_forward_map module beetroots.approx_optim.forward_map.nn module beetroots.approx_optim.forward_map.poly_reg module beetroots.approx_optim.nn_bo module beetroots.approx_optim.nn_bo_real_data module beetroots.approx_optim.nn_bo_toycase module beetroots.inversion module beetroots.inversion.plots module beetroots.inversion.plots.map_shaper module beetroots.inversion.plots.plots_2d module beetroots.inversion.plots.plots_2d_setup module beetroots.inversion.plots.plots_estimator module beetroots.inversion.plots.readable_line_names module beetroots.inversion.results module beetroots.inversion.results.abstract_results module beetroots.inversion.results.results_mcmc module beetroots.inversion.results.results_optim_map module beetroots.inversion.results.utils module beetroots.inversion.results.utils.abstract_util module beetroots.inversion.results.utils.bayes_pval_plots module beetroots.inversion.results.utils.clppd module beetroots.inversion.results.utils.ess_plots module beetroots.inversion.results.utils.kernel module beetroots.inversion.results.utils.lowest_obj_estimator module beetroots.inversion.results.utils.mc module beetroots.inversion.results.utils.mc_utils module beetroots.inversion.results.utils.mc_utils.ess module beetroots.inversion.results.utils.mc_utils.histograms module beetroots.inversion.results.utils.mmse_ci module beetroots.inversion.results.utils.objective module beetroots.inversion.results.utils.perf_saver module beetroots.inversion.results.utils.regularization_weights module beetroots.inversion.results.utils.valid_mc module beetroots.inversion.results.utils.y_f_Theta module beetroots.inversion.run module beetroots.inversion.run.abstract_run module beetroots.inversion.run.run_mcmc module beetroots.inversion.run.run_optim_map module beetroots.modelling module beetroots.modelling.forward_maps module beetroots.modelling.forward_maps.abstract_base module beetroots.modelling.forward_maps.abstract_exp module beetroots.modelling.forward_maps.basic_exp module beetroots.modelling.forward_maps.identity module beetroots.modelling.forward_maps.neural_network_approx module

beetroots.modelling.forward_maps.regression_poly module beetroots.modelling.likelihoods module beetroots.modelling.likelihoods.abstract_likelihood module beetroots.modelling.likelihoods.approx_censored_add_mult module beetroots.modelling.likelihoods.gaussian module beetroots.modelling.likelihoods.gaussian_censored module beetroots.modelling.likelihoods.log_normal module beetroots.modelling.likelihoods.log_normal_censored module beetroots.modelling.likelihoods.utils module beetroots.modelling.posterior module beetroots.modelling.priors module beetroots.modelling.priors.abstract_prior module beetroots.modelling.priors.abstract_spatial_prior module beetroots.modelling.priors.l22_laplacian_prior module beetroots.modelling.priors.l22_prior module beetroots.modelling.priors.smooth_indicator_prior module beetroots.modelling.priors.spatial_prior_params module beetroots.modelling.priors.tv_1D_prior module beetroots.modelling.priors.tv_2D_prior module beetroots.sampler module beetroots.sampler.abstract_sampler module beetroots.sampler.my_sampler module beetroots.sampler.saver module beetroots.sampler.saver.abstract_saver module beetroots.sampler.saver.my_saver module beetroots.sampler.utils module beetroots.sampler.utils.mml module beetroots.sampler.utils.my_sampler_params module beetroots.sampler.utils.utils module beetroots.simulations module beetroots.simulations.abstract_simulation module beetroots.simulations.astro module beetroots.simulations.astro.abstract_astro_simulation module beetroots.simulations.astro.data_validation module beetroots.simulations.astro.forward_map module beetroots.simulations.astro.forward_map.abstract_forward_map module beetroots.simulations.astro.forward_map.abstract_nn module beetroots.simulations.astro.forward_map.abstract_poly_reg module beetroots.simulations.astro.observation module beetroots.simulations.astro.observation.abstract_observation module beetroots.simulations.astro.observation.abstract_real_data module beetroots.simulations.astro.observation.abstract_toy_case module beetroots.simulations.astro.posterior_type module beetroots.simulations.astro.posterior_type.abstract_direct module beetroots.simulations.astro.posterior_type.abstract_posterior_type module beetroots.simulations.astro.real_data module beetroots.simulations.astro.real_data.real_data_nn module beetroots.simulations.astro.toy_case module beetroots.simulations.astro.toy_case.toy_case_nn module beetroots.simulations.astro.toy_case.toy_case_polyreg module beetroots.space_transform module beetroots.space_transform.abstract_transform module beetroots.space_transform.id_transform module beetroots.space_transform.transform module bias (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) build_list_edges() (in module beetroots.modelling.priors.abstract_spatial_prior) build_sites() (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior method)

C

CensoredGaussianLikelihood (class in beetroots.modelling.likelihoods.gaussian_censored) CensoredLogNormalLikelihood (class in beetroots.modelling.likelihoods.log_normal_censored) chain_type (beetroots.inversion.results.utils.kernel.ResultsKernels attribute) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.objective.ResultsObjective attribute) check_input_params_file() (beetroots.simulations.abstract_simulation.Simulation class method) check_need_to_save() (beetroots.sampler.saver.abstract_saver.Saver method) check_need_to_update_memory() (beetroots.sampler.saver.abstract_saver.Saver method) check_num_uniques() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) cloud_name (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) cluster_sigma_a_raw() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) coeff_arr (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) coeff_arr_subset (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) coeff_grad (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) coeff_grad_subset (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) coeff_hess_diag (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) coeff_hess_diag_subset (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) compute_all() (beetroots.modelling.forward_maps.abstract_base.ForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.identity.BasicForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) (beetroots.modelling.posterior.Posterior method) compute_all_for_saver() (beetroots.modelling.posterior.Posterior method) compute_correction_term (beetroots.sampler.my_sampler.MySampler attribute) (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute) compute_derivatives_2nd_order (beetroots.sampler.my_sampler.MySampler attribute) compute_ess() (in module beetroots.inversion.results.utils.mc_utils.ess) compute_grad_poly_params() (in module beetroots.modelling.forward_maps.regression_poly)

compute_gradient_from_laplacian() (in module beetroots.modelling.priors.l22_laplacian_prior) compute_gradient_from_tv_matrix() (in module beetroots.modelling.priors.tv_2D_prior) compute_hess_diag_poly_params() (in module beetroots.modelling.forward_maps.regression_poly) compute_lambda() (in module beetroots.approx_optim.approach_type.utils) compute_laplacian() (in module beetroots.modelling.priors.l22_laplacian_prior) compute_log10_f_Theta() (beetroots.approx_optim.forward_map.abstract_forward_map.ApproxOptimForwardMap method) (beetroots.approx_optim.forward_map.nn.ApproxOptimNN method) (beetroots.approx_optim.forward_map.poly_reg.ApproxOptimPolynomialReg method) compute_MSE() (beetroots.inversion.results.utils.perf_saver.EstimatorPerfSaver static method) compute_neglog_chromatic_from_laplacian2() (in module beetroots.modelling.priors.l22_laplacian_prior) compute_nlpdf_spatial_proposal() (in module beetroots.sampler.utils.utils) compute_SNR() (beetroots.inversion.results.utils.perf_saver.EstimatorPerfSaver static method) compute_sum_subsets_mean() (in module beetroots.sampler.utils.utils) compute_tv_matrix() (in module beetroots.modelling.priors.tv_2D_prior) CONFIDENCE_THRESHOLD_ALPHA (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) CONFIDENCE_THRESHOLD_DELTA (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) cost_au() (in module beetroots.modelling.likelihoods.approx_censored_add_mult) cost_mu() (in module beetroots.modelling.likelihoods.approx_censored_add_mult) create_empty_output_folders() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) (beetroots.simulations.abstract_simulation.Simulation method) create_folders() (beetroots.inversion.results.utils.abstract_util.ResultsUtil method) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues method) (beetroots.inversion.results.utils.clppd.ResultsCLPPD method) (beetroots.inversion.results.utils.ess_plots.ResultsESS method) (beetroots.inversion.results.utils.kernel.ResultsKernels method) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective method) (beetroots.inversion.results.utils.mc.ResultsMC method) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI method) (beetroots.inversion.results.utils.objective.ResultsObjective method) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights method) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC method) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta method) current (beetroots.sampler.my_sampler.MySampler attribute)

D

D (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.inversion.results.utils.clppd.ResultsCLPPD attribute) (beetroots.inversion.results.utils.ess_plots.ResultsESS attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) (beetroots.modelling.posterior.Posterior attribute) (beetroots.modelling.priors.abstract_prior.PriorProbaDistribution attribute) (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute) (beetroots.sampler.abstract_sampler.Sampler attribute) (beetroots.sampler.my_sampler.MySampler attribute) (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) (beetroots.space_transform.transform.MyScaler attribute) D_no_kappa (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute)

D_sampling (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) DATA_PATH (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) deg (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) device (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) dict_fixed_values_scaled (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) dict_neighbors (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute) dict_sites (beetroots.modelling.posterior.Posterior attribute) (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute) dim (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute)

E

EBayesMMLE (class in beetroots.sampler.utils.mml) EBayesMMLELogRate (class in beetroots.sampler.utils.mml) EBayesMMLELogScale (class in beetroots.sampler.utils.mml) EBayesMMLERate (class in beetroots.sampler.utils.mml) EBayesMMLEScale (class in beetroots.sampler.utils.mml) effective_len_mc (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) effective_T (beetroots.inversion.results.utils.kernel.ResultsKernels attribute) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective attribute) effective_T_BI (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.objective.ResultsObjective attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) effective_T_MC (beetroots.inversion.results.utils.objective.ResultsObjective attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) eps0 (beetroots.sampler.my_sampler.MySampler attribute) ESS_OPTIM (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.sampler.abstract_sampler.Sampler attribute) estimate_avg_dks_full_bo() (in module beetroots.approx_optim.approach_type.utils) estimate_point_with_lowest_obj() (beetroots.inversion.results.utils.perf_saver.EstimatorPerfSaver static method) estimate_regu_weight() (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights method) EstimatorPerfSaver (class in beetroots.inversion.results.utils.perf_saver) evaluate() (beetroots.modelling.forward_maps.abstract_base.ForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.identity.BasicForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method)

evaluate_all_forward_map() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) evaluate_all_nll_utils() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) evaluate_cdf() (in module beetroots.approx_optim.approach_type.utils) evaluate_log() (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) evaluate_pdf() (in module beetroots.approx_optim.approach_type.utils) evaluate_poly() (in module beetroots.modelling.forward_maps.regression_poly) ExpForwardMap (class in beetroots.modelling.forward_maps.abstract_exp) exponent (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute) extract_optimal_params() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) extreme_grad (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute)

F

final_next_batch_size (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) find_lowest_objective() (beetroots.inversion.results.utils.objective.ResultsObjective method) forward_map (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) ForwardMap (class in beetroots.modelling.forward_maps.abstract_base) freq_save (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute)

from_lin_to_scaled() (beetroots.space_transform.abstract_transform.Scaler method) (beetroots.space_transform.id_transform.IdScaler method) (beetroots.space_transform.transform.MyScaler method) from_scaled_to_lin() (beetroots.space_transform.abstract_transform.Scaler method) (beetroots.space_transform.id_transform.IdScaler method) (beetroots.space_transform.transform.MyScaler method) from_vector_idx_to_map_coords() (beetroots.inversion.plots.map_shaper.MapShaper method) from_vector_to_map() (beetroots.inversion.plots.map_shaper.MapShaper method) full_mc_analysis() (beetroots.inversion.results.utils.mc.ResultsMC method)

G

GaussianLikelihood (class in beetroots.modelling.likelihoods.gaussian) gelman_rubin() (in module beetroots.inversion.results.utils.mc_utils.ess) generate_new_sample_mtm() (beetroots.sampler.my_sampler.MySampler method) generate_new_sample_pmala_rmsprop() (beetroots.sampler.my_sampler.MySampler method) generate_random_start_Theta() (beetroots.sampler.abstract_sampler.Sampler method) generate_random_start_Theta_1pix() (beetroots.sampler.abstract_sampler.Sampler method) (beetroots.sampler.my_sampler.MySampler method) get_neighboring_pixels() (in module beetroots.sampler.utils.utils) get_rng_state() (beetroots.sampler.abstract_sampler.Sampler method) grad_model_mixing_param() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) grad_neglog_pdf() (beetroots.modelling.posterior.Posterior method) grad_P_lambda (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) grad_poly() (in module beetroots.modelling.forward_maps.regression_poly) gradient() (beetroots.modelling.forward_maps.abstract_base.ForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.identity.BasicForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) gradient_cost_au() (in module beetroots.modelling.likelihoods.approx_censored_add_mult) gradient_cost_mu() (in module beetroots.modelling.likelihoods.approx_censored_add_mult) gradient_log() (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method)

gradient_neglog_pdf() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) (beetroots.modelling.priors.abstract_prior.PriorProbaDistribution method) (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior method) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior method) (beetroots.modelling.priors.l22_prior.L22SpatialPrior method) (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior method) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior method) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior method) gradient_neglog_pdf_ac() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) gradient_neglog_pdf_au() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) gradient_neglog_pdf_mc() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) gradient_neglog_pdf_mu() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) gradient_penalty() (in module beetroots.modelling.priors.smooth_indicator_prior)

H

hess_diag() (beetroots.modelling.forward_maps.abstract_base.ForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.identity.BasicForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) hess_diag_log() (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) hess_diag_model_mixing_param() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) hess_diag_neglog_pdf() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) (beetroots.modelling.posterior.Posterior method) (beetroots.modelling.priors.abstract_prior.PriorProbaDistribution method) (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior method) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior method) (beetroots.modelling.priors.l22_prior.L22SpatialPrior method) (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior method) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior method) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior method)

hess_diag_neglog_pdf_ac() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) hess_diag_neglog_pdf_au() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) hess_diag_neglog_pdf_mc() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) hess_diag_neglog_pdf_mu() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) hess_diag_P_lambda (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) hess_diag_penalty() (in module beetroots.modelling.priors.smooth_indicator_prior) hess_diag_poly() (in module beetroots.modelling.forward_maps.regression_poly) history_weight (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute) homogeneity (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute)

I

IdScaler (class in beetroots.space_transform.id_transform) index_arr (beetroots.inversion.plots.map_shaper.MapShaper attribute) indicator_margin_scale (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) indices_output_subset() (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) initial_regu_weights (beetroots.modelling.priors.spatial_prior_params.SpatialPriorParams attribute) initial_step_size (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute) initial_weights (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute)

initialize_memory() (beetroots.sampler.saver.abstract_saver.Saver method) (beetroots.sampler.saver.my_saver.MySaver method) inversion_mcmc() (beetroots.simulations.astro.posterior_type.abstract_direct.SimulationMySampler method) (beetroots.simulations.astro.posterior_type.abstract_posterior_type.SimulationPosteriorType method) inversion_optim_map() (beetroots.simulations.astro.posterior_type.abstract_direct.SimulationMySampler method) (beetroots.simulations.astro.posterior_type.abstract_posterior_type.SimulationPosteriorType method) is_stochastic (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute)

K

K (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute)

k_mtm (beetroots.sampler.my_sampler.MySampler attribute) (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute)

L

L (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) (beetroots.modelling.posterior.Posterior attribute) (beetroots.sampler.abstract_sampler.Sampler attribute) (beetroots.sampler.my_sampler.MySampler attribute) (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) L22LaplacianSpatialPrior (class in beetroots.modelling.priors.l22_laplacian_prior) L22SpatialPrior (class in beetroots.modelling.priors.l22_prior) lambda_ (beetroots.sampler.my_sampler.MySampler attribute) likelihood (beetroots.modelling.posterior.Posterior attribute) Likelihood (class in beetroots.modelling.likelihoods.abstract_likelihood) lines_to_latex() (in module beetroots.inversion.plots.readable_line_names) list_edges (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute) list_fixed_values (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) list_idx_sampling (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) list_indices_fixed (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) list_indices_fixed_for_nn (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute)

list_indices_to_sample (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) list_indices_to_sample_for_nn (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) list_is_log (beetroots.space_transform.transform.MyScaler attribute) list_lines (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) list_lines_fit (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) list_lines_valid (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) list_names (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) list_names_plot (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) list_names_plots (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) load_params() (beetroots.simulations.abstract_simulation.Simulation class method) log10_f_grid_size (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) LOG_10 (beetroots.space_transform.transform.MyScaler attribute) log_fm1 (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) log_fp1 (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) log_omega (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) log_y (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) LOGE_10 (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) LogNormalLikelihood (class in beetroots.modelling.likelihoods.log_normal) logpdf_normal() (in module beetroots.modelling.likelihoods.utils) logy (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) lower_bounds (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) lower_bounds_full (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) lower_bounds_lin (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute)

M

main() (beetroots.approx_optim.nn_bo.ApproxParamsOptimNNBO method) (beetroots.inversion.results.abstract_results.ResultsExtractor method) (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC method) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP method) (beetroots.inversion.results.utils.abstract_util.ResultsUtil method) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues method) (beetroots.inversion.results.utils.clppd.ResultsCLPPD method) (beetroots.inversion.results.utils.ess_plots.ResultsESS method) (beetroots.inversion.results.utils.kernel.ResultsKernels method) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective method) (beetroots.inversion.results.utils.mc.ResultsMC method) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI method) (beetroots.inversion.results.utils.objective.ResultsObjective method) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights method) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC method) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta method) (beetroots.inversion.run.abstract_run.Run method) (beetroots.inversion.run.run_mcmc.RunMCMC method) (beetroots.inversion.run.run_optim_map.RunOptimMAP method) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN method) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN method) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg method) map_shaper (beetroots.inversion.plots.plots_2d.AbstractPlots2D attribute) (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup attribute) (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) MapShaper (class in beetroots.inversion.plots.map_shaper) max_workers (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.run.run_mcmc.RunMCMC attribute) (beetroots.inversion.run.run_optim_map.RunOptimMAP attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) mean_ (beetroots.space_transform.transform.MyScaler attribute) mean_theta (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute) mean_theta_old (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute) memory (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) MixingModelsLikelihood (class in beetroots.modelling.likelihoods.approx_censored_add_mult) model_mixing_param() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) model_name (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.inversion.results.utils.clppd.ResultsCLPPD attribute) (beetroots.inversion.results.utils.ess_plots.ResultsESS attribute) (beetroots.inversion.results.utils.kernel.ResultsKernels attribute) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI attribute) (beetroots.inversion.results.utils.objective.ResultsObjective attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) MODELS_PATH (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) module beetroots beetroots.approx_optim beetroots.approx_optim.abstract_approx_optim beetroots.approx_optim.approach_type beetroots.approx_optim.approach_type.abstract_approach_type beetroots.approx_optim.approach_type.bo beetroots.approx_optim.approach_type.utils beetroots.approx_optim.forward_map beetroots.approx_optim.forward_map.abstract_forward_map beetroots.approx_optim.forward_map.nn beetroots.approx_optim.forward_map.poly_reg beetroots.approx_optim.nn_bo beetroots.approx_optim.nn_bo_real_data beetroots.approx_optim.nn_bo_toycase beetroots.inversion beetroots.inversion.plots beetroots.inversion.plots.map_shaper beetroots.inversion.plots.plots_2d beetroots.inversion.plots.plots_2d_setup beetroots.inversion.plots.plots_estimator beetroots.inversion.plots.readable_line_names beetroots.inversion.results beetroots.inversion.results.abstract_results beetroots.inversion.results.results_mcmc beetroots.inversion.results.results_optim_map beetroots.inversion.results.utils beetroots.inversion.results.utils.abstract_util beetroots.inversion.results.utils.bayes_pval_plots beetroots.inversion.results.utils.clppd beetroots.inversion.results.utils.ess_plots beetroots.inversion.results.utils.kernel beetroots.inversion.results.utils.lowest_obj_estimator beetroots.inversion.results.utils.mc beetroots.inversion.results.utils.mc_utils beetroots.inversion.results.utils.mc_utils.ess beetroots.inversion.results.utils.mc_utils.histograms beetroots.inversion.results.utils.mmse_ci beetroots.inversion.results.utils.objective beetroots.inversion.results.utils.perf_saver beetroots.inversion.results.utils.regularization_weights beetroots.inversion.results.utils.valid_mc beetroots.inversion.results.utils.y_f_Theta beetroots.inversion.run beetroots.inversion.run.abstract_run beetroots.inversion.run.run_mcmc beetroots.inversion.run.run_optim_map beetroots.modelling beetroots.modelling.forward_maps beetroots.modelling.forward_maps.abstract_base beetroots.modelling.forward_maps.abstract_exp beetroots.modelling.forward_maps.basic_exp beetroots.modelling.forward_maps.identity beetroots.modelling.forward_maps.neural_network_approx beetroots.modelling.forward_maps.regression_poly beetroots.modelling.likelihoods beetroots.modelling.likelihoods.abstract_likelihood beetroots.modelling.likelihoods.approx_censored_add_mult beetroots.modelling.likelihoods.gaussian beetroots.modelling.likelihoods.gaussian_censored beetroots.modelling.likelihoods.log_normal beetroots.modelling.likelihoods.log_normal_censored beetroots.modelling.likelihoods.utils beetroots.modelling.posterior beetroots.modelling.priors beetroots.modelling.priors.abstract_prior beetroots.modelling.priors.abstract_spatial_prior beetroots.modelling.priors.l22_laplacian_prior beetroots.modelling.priors.l22_prior beetroots.modelling.priors.smooth_indicator_prior beetroots.modelling.priors.spatial_prior_params beetroots.modelling.priors.tv_1D_prior beetroots.modelling.priors.tv_2D_prior beetroots.sampler beetroots.sampler.abstract_sampler beetroots.sampler.my_sampler beetroots.sampler.saver beetroots.sampler.saver.abstract_saver beetroots.sampler.saver.my_saver beetroots.sampler.utils beetroots.sampler.utils.mml beetroots.sampler.utils.my_sampler_params beetroots.sampler.utils.utils beetroots.simulations beetroots.simulations.abstract_simulation beetroots.simulations.astro beetroots.simulations.astro.abstract_astro_simulation beetroots.simulations.astro.data_validation beetroots.simulations.astro.forward_map beetroots.simulations.astro.forward_map.abstract_forward_map beetroots.simulations.astro.forward_map.abstract_nn beetroots.simulations.astro.forward_map.abstract_poly_reg beetroots.simulations.astro.observation beetroots.simulations.astro.observation.abstract_observation beetroots.simulations.astro.observation.abstract_real_data beetroots.simulations.astro.observation.abstract_toy_case beetroots.simulations.astro.posterior_type beetroots.simulations.astro.posterior_type.abstract_direct beetroots.simulations.astro.posterior_type.abstract_posterior_type beetroots.simulations.astro.real_data beetroots.simulations.astro.real_data.real_data_nn beetroots.simulations.astro.toy_case beetroots.simulations.astro.toy_case.toy_case_nn beetroots.simulations.astro.toy_case.toy_case_polyreg beetroots.space_transform beetroots.space_transform.abstract_transform beetroots.space_transform.id_transform beetroots.space_transform.transform

mtm_neglog_pdf_priors() (beetroots.modelling.posterior.Posterior method) MySampler (class in beetroots.sampler.my_sampler) MySamplerParams (class in beetroots.sampler.utils.my_sampler_params) MySaver (class in beetroots.sampler.saver.my_saver) MyScaler (class in beetroots.space_transform.transform)

N

N (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.inversion.plots.map_shaper.MapShaper attribute) (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup attribute) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.inversion.results.utils.clppd.ResultsCLPPD attribute) (beetroots.inversion.results.utils.ess_plots.ResultsESS attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI attribute) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) (beetroots.modelling.forward_maps.abstract_base.ForwardMap attribute) (beetroots.modelling.forward_maps.abstract_exp.ExpForwardMap attribute) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) (beetroots.modelling.posterior.Posterior attribute) (beetroots.modelling.priors.abstract_prior.PriorProbaDistribution attribute) (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute) (beetroots.sampler.abstract_sampler.Sampler attribute) (beetroots.sampler.my_sampler.MySampler attribute) (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) N0 (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute) N1 (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute) N_clusters (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute)

N_MCMC (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.objective.ResultsObjective attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) N_optim_per_line (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) N_run (beetroots.inversion.results.utils.kernel.ResultsKernels attribute) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective attribute) N_samples_theta (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) N_samples_y (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) name (beetroots.modelling.priors.spatial_prior_params.SpatialPriorParams attribute) neg_log_pdf_add() (in module beetroots.approx_optim.approach_type.utils) neg_log_pdf_mult() (in module beetroots.approx_optim.approach_type.utils) neglog_pdf() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) (beetroots.modelling.posterior.Posterior method) (beetroots.modelling.priors.abstract_prior.PriorProbaDistribution method) (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior method) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior method) (beetroots.modelling.priors.l22_prior.L22SpatialPrior method) (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior method) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior method) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior method) neglog_pdf_ac() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) neglog_pdf_au() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood method) neglog_pdf_candidates() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) neglog_pdf_mc() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) neglog_pdf_mu() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) neglog_pdf_one_pix() (beetroots.modelling.priors.l22_prior.L22SpatialPrior method) (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior method) neglog_pdf_priors() (beetroots.modelling.posterior.Posterior method) network (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox attribute) NeuralNetworkApprox (class in beetroots.modelling.forward_maps.neural_network_approx) next_batch_size (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) norm_pdf_cdf_ratio() (in module beetroots.modelling.likelihoods.utils) numba_logsumexp_stable() (in module beetroots.sampler.utils.utils)

O

omega (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) optimization() (beetroots.approx_optim.approach_type.abstract_approach_type.ApproachType method) (beetroots.approx_optim.approach_type.bo.BayesianOptimizationApproach method)

output_subset (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap attribute) (beetroots.modelling.forward_maps.identity.BasicForwardMap attribute) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) output_subset_indices (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) outputs_names (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute)

P

P_lambda (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) parse_args() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim class method) (beetroots.simulations.abstract_simulation.Simulation class method) (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation class method) path_centroids (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) path_data_csv (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_data_csv_in (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_data_csv_out (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.inversion.results.utils.clppd.ResultsCLPPD attribute) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective attribute) (beetroots.inversion.run.run_mcmc.RunMCMC attribute) (beetroots.inversion.run.run_optim_map.RunOptimMAP attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_data_csv_out_mcmc (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.utils.ess_plots.ResultsESS attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_data_csv_out_optim_map (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_data_csv_out_optim_mle (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_img (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup attribute) (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues attribute) (beetroots.inversion.results.utils.clppd.ResultsCLPPD attribute) (beetroots.inversion.results.utils.ess_plots.ResultsESS attribute) (beetroots.inversion.results.utils.kernel.ResultsKernels attribute) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI attribute) (beetroots.inversion.results.utils.objective.ResultsObjective attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_intermediate_result (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) path_output_sim (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) path_raw (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute)

pdf_my_approx() (in module beetroots.approx_optim.approach_type.utils) penalty() (in module beetroots.modelling.priors.smooth_indicator_prior) penalty_one_pix() (in module beetroots.modelling.priors.smooth_indicator_prior) pgd_rate() (in module beetroots.sampler.utils.mml) pgd_rate_log() (in module beetroots.sampler.utils.mml) pgd_scale() (in module beetroots.sampler.utils.mml) pgd_scale_log() (in module beetroots.sampler.utils.mml) pixels_of_interest (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) pixels_of_interest_coords (beetroots.inversion.plots.plots_2d.AbstractPlots2D attribute) (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup attribute) (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) pixels_of_interest_names (beetroots.inversion.plots.plots_2d.AbstractPlots2D attribute) (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup attribute) (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) plot_1D_chain() (in module beetroots.inversion.results.utils.mc_utils.histograms) plot_1D_hist() (in module beetroots.inversion.results.utils.mc_utils.histograms) plot_2D_chain() (in module beetroots.inversion.results.utils.mc_utils.histograms) plot_2D_hist() (in module beetroots.inversion.results.utils.mc_utils.histograms) plot_2D_proba_contours() (in module beetroots.inversion.results.utils.mc_utils.histograms) plot_accept_freq() (beetroots.inversion.results.utils.kernel.ResultsKernels method) plot_all() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_censored_lines_proportion() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_CI_size() (beetroots.inversion.plots.plots_estimator.PlotsEstimator method) plot_CI_size_u() (beetroots.inversion.plots.plots_estimator.PlotsEstimator method) plot_clusters_sigma_a() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) plot_cost_map() (beetroots.approx_optim.approach_type.abstract_approach_type.ApproachType method) (beetroots.approx_optim.approach_type.bo.BayesianOptimizationApproach method) plot_estimator() (beetroots.inversion.plots.plots_estimator.PlotsEstimator method) plot_estimator_u() (beetroots.inversion.plots.plots_estimator.PlotsEstimator method) plot_evaluation_points() (beetroots.approx_optim.approach_type.bo.BayesianOptimizationApproach method) plot_GP() (beetroots.approx_optim.approach_type.bo.BayesianOptimizationApproach method) plot_hist_log10_f_Theta() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) plot_hist_log10_f_Theta_with_optim_results() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) plot_indices_map() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_log_proba_accept() (beetroots.inversion.results.utils.kernel.ResultsKernels method) plot_mask_censored_pixels() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_normalized_nll() (beetroots.inversion.results.utils.objective.ResultsObjective method) plot_objective() (beetroots.inversion.results.utils.objective.ResultsObjective method) plot_observations() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_params_with_sigma_a() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) plot_sigma_a() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_sites_map() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) plot_snr_add() (beetroots.inversion.plots.plots_2d_setup.Plots2DSetup method) Plots2DSetup (class in beetroots.inversion.plots.plots_2d_setup) plots_estimator (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) plots_postprocessing() (beetroots.approx_optim.approach_type.bo.BayesianOptimizationApproach method) PlotsEstimator (class in beetroots.inversion.plots.plots_estimator) PolynomialApprox (class in beetroots.modelling.forward_maps.regression_poly) Posterior (class in beetroots.modelling.posterior) pow_arr (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) pow_grad (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) pow_hess_diag (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox attribute) prepare_run() (beetroots.inversion.run.abstract_run.Run method) (beetroots.inversion.run.run_mcmc.RunMCMC method) (beetroots.inversion.run.run_optim_map.RunOptimMAP method) prior_indicator (beetroots.modelling.posterior.Posterior attribute) prior_spatial (beetroots.modelling.posterior.Posterior attribute) PriorProbaDistribution (class in beetroots.modelling.priors.abstract_prior)

R

read_data() (beetroots.inversion.results.utils.abstract_util.ResultsUtil method) (beetroots.inversion.results.utils.bayes_pval_plots.ResultsBayesPvalues method) (beetroots.inversion.results.utils.clppd.ResultsCLPPD method) (beetroots.inversion.results.utils.ess_plots.ResultsESS method) (beetroots.inversion.results.utils.kernel.ResultsKernels method) (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective method) (beetroots.inversion.results.utils.mc.ResultsMC method) (beetroots.inversion.results.utils.mmse_ci.ResultsMMSEandCI method) (beetroots.inversion.results.utils.objective.ResultsObjective method) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights method) (beetroots.inversion.results.utils.valid_mc.ResultsValidMC method) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta method) read_estimator() (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP class method) ReadDataRealData (class in beetroots.approx_optim.nn_bo_real_data) restrict_to_output_subset() (beetroots.modelling.forward_maps.abstract_base.ForwardMap method) (beetroots.modelling.forward_maps.basic_exp.BasicExpForwardMap method) (beetroots.modelling.forward_maps.identity.BasicForwardMap method) (beetroots.modelling.forward_maps.neural_network_approx.NeuralNetworkApprox method) (beetroots.modelling.forward_maps.regression_poly.PolynomialApprox method) results_path (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) ResultsBayesPvalues (class in beetroots.inversion.results.utils.bayes_pval_plots)

ResultsCLPPD (class in beetroots.inversion.results.utils.clppd) ResultsDistributionComparisonYandFTheta (class in beetroots.inversion.results.utils.y_f_Theta) ResultsESS (class in beetroots.inversion.results.utils.ess_plots) ResultsExtractor (class in beetroots.inversion.results.abstract_results) ResultsExtractorMCMC (class in beetroots.inversion.results.results_mcmc) ResultsExtractorOptimMAP (class in beetroots.inversion.results.results_optim_map) ResultsKernels (class in beetroots.inversion.results.utils.kernel) ResultsLowestObjective (class in beetroots.inversion.results.utils.lowest_obj_estimator) ResultsMC (class in beetroots.inversion.results.utils.mc) ResultsMMSEandCI (class in beetroots.inversion.results.utils.mmse_ci) ResultsObjective (class in beetroots.inversion.results.utils.objective) ResultsRegularizationWeights (class in beetroots.inversion.results.utils.regularization_weights) ResultsUtil (class in beetroots.inversion.results.utils.abstract_util) ResultsValidMC (class in beetroots.inversion.results.utils.valid_mc) rewrite_logs_correct_json_format() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) rng (beetroots.sampler.abstract_sampler.Sampler attribute) (beetroots.sampler.my_sampler.MySampler attribute) Run (class in beetroots.inversion.run.abstract_run) run() (beetroots.inversion.run.abstract_run.Run method) (beetroots.inversion.run.run_mcmc.RunMCMC method) (beetroots.inversion.run.run_optim_map.RunOptimMAP method) RunMCMC (class in beetroots.inversion.run.run_mcmc) RunOptimMAP (class in beetroots.inversion.run.run_optim_map)

S

sample() (beetroots.sampler.abstract_sampler.Sampler method) (beetroots.sampler.my_sampler.MySampler method) sample_conditional_spatial_and_indicator_prior() (in module beetroots.sampler.utils.utils) sample_conditional_spatial_prior() (in module beetroots.sampler.utils.utils) sample_generalized_gaussian() (in module beetroots.sampler.utils.utils) sample_observation_model() (beetroots.modelling.likelihoods.abstract_likelihood.Likelihood method) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood method) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood method) sample_regu_hyperparams() (beetroots.sampler.abstract_sampler.Sampler method) sample_smooth_indicator() (in module beetroots.sampler.utils.utils) sample_theta() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) Sampler (class in beetroots.sampler.abstract_sampler) save_additional() (beetroots.sampler.saver.abstract_saver.Saver method) save_and_plot_setup() (beetroots.simulations.astro.observation.abstract_observation.SimulationObservation method) save_estimator_performance() (beetroots.inversion.results.utils.perf_saver.EstimatorPerfSaver method) save_estimator_to_csv() (beetroots.inversion.results.utils.lowest_obj_estimator.ResultsLowestObjective method) save_forward_map_evals (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) save_results_in_data_folder() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) save_setup_to_json() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) save_to_file() (beetroots.sampler.saver.abstract_saver.Saver method) Saver (class in beetroots.sampler.saver.abstract_saver) scale (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute) scale_dict_fixed_params() (beetroots.approx_optim.forward_map.abstract_forward_map.ApproxOptimForwardMap method) (beetroots.simulations.astro.forward_map.abstract_forward_map.SimulationForwardMap method) scaler (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) Scaler (class in beetroots.space_transform.abstract_transform) schema (in module beetroots.simulations.astro.data_validation) selection_probas (beetroots.sampler.my_sampler.MySampler attribute) (beetroots.sampler.utils.my_sampler_params.MySamplerParams attribute) set_likelihood_approx_parameters() (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood method) set_results_path() (beetroots.sampler.saver.abstract_saver.Saver method) set_rng_state() (beetroots.sampler.abstract_sampler.Sampler method) set_sampled_and_fixed_entries() (beetroots.modelling.forward_maps.abstract_base.ForwardMap method) setup() (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN method) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN method) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg method)

setup_forward_map() (beetroots.approx_optim.forward_map.nn.ApproxOptimNN method) (beetroots.approx_optim.forward_map.poly_reg.ApproxOptimPolynomialReg method) (beetroots.simulations.astro.forward_map.abstract_forward_map.SimulationForwardMap method) (beetroots.simulations.astro.forward_map.abstract_nn.SimulationNN method) (beetroots.simulations.astro.forward_map.abstract_poly_reg.SimulationPolynomialReg method) setup_observation() (beetroots.simulations.astro.observation.abstract_observation.SimulationObservation method) (beetroots.simulations.astro.observation.abstract_real_data.SimulationRealData method) (beetroots.simulations.astro.observation.abstract_toy_case.SimulationToyCase method) setup_params_bounds() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) setup_plot_text_sizes() (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim method) (beetroots.simulations.abstract_simulation.Simulation method) setup_posteriors() (beetroots.simulations.astro.posterior_type.abstract_direct.SimulationMySampler method) (beetroots.simulations.astro.posterior_type.abstract_posterior_type.SimulationPosteriorType method) sigma (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute) sigma_a (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) sigma_m (beetroots.approx_optim.abstract_approx_optim.ApproxParamsOptim attribute) (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) simu_name (beetroots.simulations.astro.abstract_astro_simulation.AstroSimulation attribute) Simulation (class in beetroots.simulations.abstract_simulation) SimulationForwardMap (class in beetroots.simulations.astro.forward_map.abstract_forward_map) SimulationMySampler (class in beetroots.simulations.astro.posterior_type.abstract_direct) SimulationNN (class in beetroots.simulations.astro.forward_map.abstract_nn) SimulationObservation (class in beetroots.simulations.astro.observation.abstract_observation) SimulationPolynomialReg (class in beetroots.simulations.astro.forward_map.abstract_poly_reg) SimulationPosteriorType (class in beetroots.simulations.astro.posterior_type.abstract_posterior_type) SimulationRealData (class in beetroots.simulations.astro.observation.abstract_real_data) SimulationRealDataNN (class in beetroots.simulations.astro.real_data.real_data_nn) SimulationToyCase (class in beetroots.simulations.astro.observation.abstract_toy_case) SimulationToyCaseNN (class in beetroots.simulations.astro.toy_case.toy_case_nn) SimulationToyCasePolyReg (class in beetroots.simulations.astro.toy_case.toy_case_polyreg) SmoothIndicatorPrior (class in beetroots.modelling.priors.smooth_indicator_prior) SpatialPrior (class in beetroots.modelling.priors.abstract_spatial_prior) SpatialPriorParams (class in beetroots.modelling.priors.spatial_prior_params) std_ (beetroots.space_transform.transform.MyScaler attribute) stochastic (beetroots.sampler.my_sampler.MySampler attribute) sum_weights (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute)

T

T_BI (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) t_last_init (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute) t_last_save (beetroots.sampler.saver.abstract_saver.Saver attribute) (beetroots.sampler.saver.my_saver.MySaver attribute)

T_MC (beetroots.inversion.results.results_mcmc.ResultsExtractorMCMC attribute) (beetroots.inversion.results.results_optim_map.ResultsExtractorOptimMAP attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute) (beetroots.inversion.results.utils.regularization_weights.ResultsRegularizationWeights attribute) (beetroots.inversion.results.utils.y_f_Theta.ResultsDistributionComparisonYandFTheta attribute) Theta_true_scaled (beetroots.simulations.astro.real_data.real_data_nn.SimulationRealDataNN attribute) (beetroots.simulations.astro.toy_case.toy_case_nn.SimulationToyCaseNN attribute) (beetroots.simulations.astro.toy_case.toy_case_polyreg.SimulationToyCasePolyReg attribute) TVeps1DSpatialPrior (class in beetroots.modelling.priors.tv_1D_prior) TVeps2DSpatialPrior (class in beetroots.modelling.priors.tv_2D_prior)

U

update() (beetroots.sampler.utils.mml.EBayesMMLE method) update_memory() (beetroots.sampler.saver.abstract_saver.Saver method) (beetroots.sampler.saver.my_saver.MySaver method) upper_bounds (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) upper_bounds_full (beetroots.modelling.priors.smooth_indicator_prior.SmoothIndicatorPrior attribute) upper_bounds_lin (beetroots.inversion.plots.plots_estimator.PlotsEstimator attribute) (beetroots.inversion.results.utils.mc.ResultsMC attribute)

use_next_nearest_neighbors (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.spatial_prior_params.SpatialPriorParams attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute)

V

v (beetroots.sampler.my_sampler.MySampler attribute) vmax (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute)

vmin (beetroots.sampler.utils.mml.EBayesMMLE attribute) (beetroots.sampler.utils.mml.EBayesMMLELogRate attribute) (beetroots.sampler.utils.mml.EBayesMMLELogScale attribute) (beetroots.sampler.utils.mml.EBayesMMLERate attribute) (beetroots.sampler.utils.mml.EBayesMMLEScale attribute)

W

weights (beetroots.modelling.priors.abstract_spatial_prior.SpatialPrior attribute) (beetroots.modelling.priors.l22_laplacian_prior.L22LaplacianSpatialPrior attribute) (beetroots.modelling.priors.l22_prior.L22SpatialPrior attribute) (beetroots.modelling.priors.tv_1D_prior.TVeps1DSpatialPrior attribute) (beetroots.modelling.priors.tv_2D_prior.TVeps2DSpatialPrior attribute)

Y

y (beetroots.modelling.likelihoods.approx_censored_add_mult.MixingModelsLikelihood attribute) (beetroots.modelling.likelihoods.gaussian.GaussianLikelihood attribute) (beetroots.modelling.likelihoods.gaussian_censored.CensoredGaussianLikelihood attribute) (beetroots.modelling.likelihoods.log_normal.LogNormalLikelihood attribute) (beetroots.modelling.likelihoods.log_normal_censored.CensoredLogNormalLikelihood attribute)